PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000295812
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 404aa    MW: 45112.1 Da    PI: 10.2783
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000295812genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.71.5e-10260279322
                    -SS-EEEEEEE--TT-SS-E CS
           WRKY   3 DgynWrKYGqKevkgsefpr 22 
                    D y+WrKYGqK++kgs++pr
  MDP0000295812 260 DDYSWRKYGQKPIKGSPHPR 279
                    99*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-17210256IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.6E-10246284IPR003657WRKY domain
PROSITE profilePS5081112.817253296IPR003657WRKY domain
SuperFamilySSF1182904.71E-8255280IPR003657WRKY domain
SMARTSM007742.4E-4258312IPR003657WRKY domain
PfamPF031061.9E-7260289IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAVDFMGYRN TXSSSSFSAK LEENAVQEAA SGLESVEKLI RLLSQAQQNQ HQEKYPSTAM  60
DMDCRAVADV AVSKFKKVIS LLGRTRTGHA RFRRAPLTVN SGSSFQPQYQ SHSQDIVVKQ  120
APLESTKVYH ATPIQQIPPS HHHHHSMVLE STMDSSNTMN FSYSAATSFM SSLTGDSDSK  180
QPMSSSAFQI TNLSQVSSAG KPPLSSTSLK RKCSSENLGS GKCGAGSSGR CHCSKKRKLR  240
QKRVVRVPAI SLKMADIPPD DYSWRKYGQK PIKGSPHPRI ELRFSGFCSW DRRACPPEEE  300
KNEEEDPVED KSKRKTRWTX RRGRPGGQTR KTKLDSXFCX IRRLWTPNLG LDVLDFLMCE  360
AVRKKEMRAA IYEDAAVVLG WSGEVVEQGE QSSKALRSRA KQRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.130650.0bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5981390.0FJ598139.1 Malus hupehensis WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008384448.10.0PREDICTED: probable WRKY transcription factor 7
TrEMBLM5W0561e-171M5W056_PRUPE; Uncharacterized protein
STRINGPOPTR_0007s10670.11e-115(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.12e-51WRKY DNA-binding protein 11